Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs115495758 chr14:24420271 A/T 4.1E-5 504 23.63 21.45 15.53 KM Plot
LGG rs115698787 chr5:157022902 T/C 3.43E-6 489 21.7 24.82 8.03 KM Plot
LGG rs115802903 chr14:24417153 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs115869329 chr14:102172553 G/C 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs115892257 chr3:153665990 A/T 0 508 22.58 22.73 0.23 KM Plot
LGG rs116117004 chr14:24420266 G/A 4.24E-5 503 23.58 21.45 15.53 KM Plot
LGG rs116344371 chr6:53117872 T/C 2.53E-5 506 22.6 21.55 14.8 KM Plot
LGG rs11643949 chr16:78082044 A/T 3.97E-10 499 6.47 25.13 21.6 KM Plot
LGG rs11707125 chr3:112828502 C/T 6.89E-5 509 22.67 23.73 15.2 KM Plot
LGG rs117520481 chr8:6186214 G/A 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs11764760 chr7:20721084 A/G 2.4E-5 509 24.75 21.13 14.47 KM Plot
LGG rs11784513 chr8:315843 A/G 6.47E-5 509 21.3 21.77 22.78 KM Plot
LGG rs11788065 chr9:37925826 G/C 0 498 22.78 20.37 2.47 KM Plot
LGG rs11789186 chr9:37975114 A/C 0 509 22.73 21.1 2.47 KM Plot
LGG rs11789441 chr9:37993303 G/T 0 507 22.6 22.87 2.47 KM Plot